For most recent list, see Google Scholar.

Preprints and Workshop Papers

  • Peidli, S.*, Green, T. D.*, et al. scPerturb: Information Resource for Harmonized Single-Cell Perturbation Data. bioRxiv (2022). (Accepted at Nature Methods)
  • Peidli, S.*, Nouailles, G.*, et al. Single-cell-resolved interspecies comparison identifiesa shared inflammatory axis and a dominant neutrophil-endothelial program in severe COVID-19. bioRxiv (2023).(Under review at Cell Reports)
  • Ji, Y., Green, T., Peidli, S., Bahrami, M., Liu, M., Zappia, L., … & Theis, F. (2023). Optimal distance metrics for single-cell RNA-seq populations. bioRxiv, 2023-12.
  • Green, T. D.*, Peidli, S.*, et al. scPerturb: Information Resource for Harmonized Single-Cell Perturbation Data. NeurIPS 2022 Workshop on Learning Meaningful Representations of Life (2022).

Publications

  • Nouailles, G., Adler, J. M., Pennitz, P., Peidli, S. et al. Live-attenuated vaccine sCPD9 elicits superior mucosal and systemic immunity to SARS-CoV-2 variants in hamsters. Nature Microbiology, 8(5), 860-874, (2023).
  • Wyler, E., Adler, J. M., Eschke, K., Alves, G. T., Peidli, S., Pott, F., … & Trimpert, J. (2022). Key benefits of dexamethasone and antibody treatment in COVID-19 hamster models revealed by single-cell transcriptomics. Molecular Therapy, 30(5), 1952-1965.
  • Uhlitz, F.*, Bischoff, P.*, Peidli, S.*, S., Sieber, A., Trinks, A., Lüthen, M., … & Morkel, M. (2021). Mitogen‐activated protein kinase activity drives cell trajectories in colorectal cancer. EMBO molecular medicine, 13(10), e14123.
  • Bergen, V., Lange, M., Peidli, S., Wolf, F. A., & Theis, F. J. (2020). Generalizing RNA velocity to transient cell states through dynamical modeling. Nature biotechnology, 38(12), 1408-1414.

*: joint first authorship